Package data.human.test.trsc

Examples of data.human.test.trsc.ScoreMergeAgainstRNA

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        System.out.println(tag);
        LandscapeBuilder lbf= new BedGraphReader(new File(rnad+"/norm_"+tag+"_for.wig")).getLandscapeBuilder();
        LandscapeBuilder lbr= new BedGraphReader(new File(rnad+"/norm_"+tag+"_rev.wig")).getLandscapeBuilder();
        File outf= new File(od+"/"+FileName.getBaseName(f)+"_"+tag+".bed");
       
        ScoreMergeAgainstRNA ss= new ScoreMergeAgainstRNA(gb, lbf, lbr);
        ss.writeToFile(outf);
    }
   
   
   
}
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        File od= new File(d+"/scoreRNAEach");
        File outf= new File(od+"/score_"+tag+"_for.bed");
        File outr= new File(od+"/score_"+tag+"_rev.bed");
       
        ScoreMergeAgainstRNA ss= new ScoreMergeAgainstRNA(gb, lbf, lbr);
        ss.writeToFile(outf);
       
        ss= new ScoreMergeAgainstRNA(gb, lbr, lbf);
        ss.writeToFile(outr);
       
    }
   
   
   
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Related Classes of data.human.test.trsc.ScoreMergeAgainstRNA

  • data.human.inhouse.chippeak.ap.ScoreRNA
  • data.human.test.trsc.time0.ScoreAgainstRNAEach
  • fork.lib.bio.anno.genomic.BedGraphReader
  • fork.lib.bio.anno.genomic.BedReader
  • fork.lib.bio.anno.genomic.LandscapeBuilder
  • fork.lib.bio.anno.genomic.LandscapeScoringStrand
  • fork.lib.bio.anno.genomic.region.GenomicRegionsBuilder
  • java.io.File
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