Package data.human.test.trsc

Examples of data.human.test.trsc.CombineRNA

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    String[] tms= new String[]{
        "0","5","10","20","40","80","160","320","640","1280",
    };
   
   
    CombineRNA jj= new CombineRNA();
    boolean ifinit= false;
   
   
    for( int i=0; i<tms.length; i++ ){
        File f= new File(rd+"/side-right_200_5_locate_ensGene_hg19_exon_mcf7_rna3_time-"+tms[i]+"_hg19.bed");
        if(FileName.getExt(f).equals("bed")){
            if(!ifinit){
                jj.initRows(f);
                ifinit=true;
            }
            jj.addBedFile(f);
        }
   
    jj.writeToFile(out);
   
    }


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    String[] tms= new String[]{
        "0","5","10","20","40","80","160","320","640","1280",
    };
   
   
    CombineRNA jj= new CombineRNA();
    boolean ifinit= false;
   
    for( int i=0; i<tms.length; i++ ){
        File f= new File(cd+"/chip_norm_wig_mcf7_chip-h2az_time-"+tms[i]+"_hg19.bed");
        if(FileName.getExt(f).equals("bed")){
            if(!ifinit){
                jj.initRows(f);
                ifinit=true;
            }
            jj.addBedFile(f);
        }
    }
   
    /**
    for( int i=0; i<tms.length; i++ ){
        File ff= new File(rd+"/side-right_200_5_locate_ensGene_hg19_exon_mcf7_rna3_time-"+tms[i]+"_hg19.bed");
        jj.addBedFile(ff);
    }
    */
   
    jj.writeToFile(out);
   
}
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Related Classes of data.human.test.trsc.CombineRNA

  • data.human.inhouse.chippeak.ap.CombineC
  • data.human.inhouse.chippeak.ap.CombineR
  • java.io.File
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