Package common

Examples of common.TuningDistribution


//    PartitionPrior partitionPrior = new DistPartitionPrior(locs,3,fragmentPenalty,sizePenalty);
    PartitionPrior fragPrior = new FragmentPartitionPrior(fragmentPenalty);
    //define tuning distribution
    RandomGenerator rg = new Well44497b();
    RandomDataImpl rng = new RandomDataImpl(rg);
    TuningDistribution tuningDistribution = new PoissonTuningDistribution(rng,1);
    //initial jumping weights
    double[] initJumpWeight = new double[n];
    java.util.Arrays.fill(initJumpWeight, 10);
    double variance = 0.1;
    double varianceRatio = 0.01;
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