Package common

Examples of common.PartitionPrior


    FragmentPenalty fragmentPenalty = new PowerFragmentPenalty(1,90);
    //define size penalty
    SizePenalty sizePenalty = new LinearSizePenalty(0);
    //define partition prior
//    PartitionPrior partitionPrior = new DistPartitionPrior(locs,3,fragmentPenalty,sizePenalty);
    PartitionPrior fragPrior = new FragmentPartitionPrior(fragmentPenalty);
    //define tuning distribution
    RandomGenerator rg = new Well44497b();
    RandomDataImpl rng = new RandomDataImpl(rg);
    TuningDistribution tuningDistribution = new PoissonTuningDistribution(rng,1);
    //initial jumping weights
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