Package com.nr.ci

Examples of com.nr.ci.Phylo_wpgma

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      }
      //      System.out.printf(endl;
    }

    // Create the agglomerative phylogenetic tree
    Phylo_wpgma tree = new Phylo_wpgma(dist);

    // Transfer to file in "newick" format
    for (i=0;i<NSEQ;i++) {
      for (j=0;j<NCHAR;j++)
        str[i][j]=base[sequence[i][j]];
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      }
//      System.out.printf(endl;
    }

    // Create the agglomerative phylogenetic tree
    Phylo_wpgma tree=new Phylo_wpgma(dist);

    // Inspect the tree
//    System.out.println("Root: %f\n", tree.root);
    localflag = tree.root != 30;
    globalflag = globalflag || localflag;
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Related Classes of com.nr.ci.Phylo_wpgma

  • com.nr.test.test_chapter16.Test_newick
  • com.nr.test.test_chapter16.Test_Phylo_wpgma
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