Jena checks URIs sometimes, particularly on input and output. It is however possible to have a Jena model which contains bad URIs. Such a model cannot be written out very easily, particularly in RDF/XML, try N-TRIPLE. An input document, particularly when no base URL is known, may introduce relative URIs into a model. These may later cause this exception.
(This one is an unchecked exception, so we don't litter our code with try-catch blocks or throws declarations.)
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