Package com.google.api.services.genomics.model

Examples of com.google.api.services.genomics.model.Variant

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        .setCallSetIds(Lists.newArrayList("id1"))
        .setPageSize(10)))
        .thenReturn(variantSearch);
    Mockito.when(variantSearch.execute()).thenReturn(
        new SearchVariantsResponse().setVariants(
            Lists.newArrayList(new Variant().setReferenceName("contig"))));

    command.handleRequest(genomics);

    String output = outContent.toString();
    assertTrue(output, output.contains("No call sets found with the name c2"));
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    command.variantIds = Lists.newArrayList("v1", "v2");

    Mockito.when(variants.get("v1")).thenReturn(variantGet);
    Mockito.when(variants.get("v2")).thenReturn(variantGet);
    Mockito.when(variantGet.execute()).thenReturn(
        new Variant().setReferenceName("contig1"),
        new Variant().setReferenceName("contig2"));

    command.handleRequest(genomics);

    String output = outContent.toString();
    assertTrue(output, output.contains("contig1"));
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Related Classes of com.google.api.services.genomics.model.Variant

  • com.google.cloud.genomics.api.client.commands.GetVariantsCommandTest
  • com.google.cloud.genomics.api.client.commands.SearchVariantsCommandTest
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