Package com.google.api.services.genomics.model

Examples of com.google.api.services.genomics.model.SearchCallSetsRequest

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    command.callSetNames = Lists.newArrayList("c1", "c2");

    Mockito.when(datasets.get("dataset")).thenReturn(datasetGet);
    Mockito.when(datasetGet.execute()).thenReturn(new Dataset().setId("id").setName("1kg"));

    Mockito.when(callsets.search(new SearchCallSetsRequest()
        .setVariantSetIds(Lists.newArrayList("dataset"))
        .setName("c1")))
        .thenReturn(callsetSearch);
    Mockito.when(callsets.search(new SearchCallSetsRequest()
        .setVariantSetIds(Lists.newArrayList("dataset"))
        .setName("c2")))
        .thenReturn(callsetSearch);
    Mockito.when(callsetSearch.execute()).thenReturn(
        new SearchCallSetsResponse().setCallSets(Lists.newArrayList(new CallSet().setId("id1"))),
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    command.name = "12878";

    Mockito.when(datasets.get("dataset")).thenReturn(datasetGet);
    Mockito.when(datasetGet.execute()).thenReturn(new Dataset().setId("id").setName("1kg"));

    Mockito.when(callsets.search(new SearchCallSetsRequest()
        .setVariantSetIds(Lists.newArrayList("dataset"))
        .setName("12878")
        .setPageSize(10)))
        .thenReturn(callsetSearch);
    Mockito.when(callsetSearch.execute()).thenReturn(new SearchCallSetsResponse()
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    if (dataset == null) {
      return;
    }
    System.out.println("Getting call sets from: " + dataset.getName());

    SearchCallSetsRequest request = new SearchCallSetsRequest()
        .setVariantSetIds(Lists.newArrayList(datasetId))
        .setName(name)
        .setPageSize(getMaxResults());

    printResults(Paginator.Callsets.create(genomics), request);
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Related Classes of com.google.api.services.genomics.model.SearchCallSetsRequest

  • com.google.cloud.genomics.api.client.commands.SearchCallSetsCommand
  • com.google.cloud.genomics.api.client.commands.SearchCallSetsCommandTest
  • com.google.cloud.genomics.api.client.commands.SearchVariantsCommandTest
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