Package com.google.api.services.genomics.model

Examples of com.google.api.services.genomics.model.CallReadGroupSetsRequest

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    Mockito.when(datasets.get("abc")).thenReturn(datasetGet);
    Mockito.when(datasetGet.execute()).thenReturn(
        new Dataset().setId("abc").setName("1kg"));

    Mockito.when(readsets.call(new CallReadGroupSetsRequest()
        .setDatasetId("abc").setSourceUris(Lists.newArrayList("uri1"))))
        .thenReturn(readsetCall);
    Mockito.when(readsetCall.execute()).thenReturn(
        new CallReadGroupSetsResponse().setJobId("8675309"));
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    }
    System.out.println("Saving called variants into: " + dataset.getName());

    // Start the job
    Genomics.Readgroupsets.Call req = genomics.readgroupsets().call(
        new CallReadGroupSetsRequest()
            .setDatasetId(datasetId)
            .setReadGroupSetIds(readGroupSetIds)
            .setSourceUris(bamFiles));
    String jobId = req.execute().getJobId();
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Related Classes of com.google.api.services.genomics.model.CallReadGroupSetsRequest

  • com.google.cloud.genomics.api.client.commands.CallVariantsCommand
  • com.google.cloud.genomics.api.client.commands.CallVariantsCommandTest
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