Examples of com.compomics.util.experiment.biology.Sample

     */
    public void createProject() throws IOException {


        // Define new project references.
        experiment = new MsExperiment(cliInputBean.getiExperimentID());
        sample = new Sample(cliInputBean.getiSampleID());
        replicateNumber = cliInputBean.getReplicate();


        // Create the analysis set of this PeptideShaker process
        SampleAnalysisSet analysisSet = new SampleAnalysisSet(sample, new ProteomicAnalysis(replicateNumber));
        experiment.addAnalysisSet(sample, analysisSet);

            peptideShakerGUI.setCurentNotes(new ArrayList<String>());
            peptideShakerGUI.updateNotesNotificationCounter();
            peptideShakerGUI.resetDisplayFeaturesGenerator();


            experiment = new MsExperiment(projectNameIdTxt.getText().trim());
            sample = new Sample(sampleNameIdtxt.getText().trim());
            replicateNumber = getReplicateNumber();
            SampleAnalysisSet analysisSet = new SampleAnalysisSet(sample, new ProteomicAnalysis(replicateNumber));
            experiment.addAnalysisSet(sample, analysisSet);


            peptideShaker = new PeptideShaker(experiment, sample, replicateNumber);

Related Classes of com.compomics.util.experiment.biology.Sample

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