Package com.compomics.util.experiment

Examples of com.compomics.util.experiment.SampleAnalysisSet


        experiment = new MsExperiment(cliInputBean.getiExperimentID());
        sample = new Sample(cliInputBean.getiSampleID());
        replicateNumber = cliInputBean.getReplicate();

        // Create the analysis set of this PeptideShaker process
        SampleAnalysisSet analysisSet = new SampleAnalysisSet(sample, new ProteomicAnalysis(replicateNumber));
        experiment.addAnalysisSet(sample, analysisSet);

        // Set the project details
        projectDetails = new ProjectDetails();
        projectDetails.setCreationDate(new Date());
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            peptideShakerGUI.resetDisplayFeaturesGenerator();

            experiment = new MsExperiment(projectNameIdTxt.getText().trim());
            sample = new Sample(sampleNameIdtxt.getText().trim());
            replicateNumber = getReplicateNumber();
            SampleAnalysisSet analysisSet = new SampleAnalysisSet(sample, new ProteomicAnalysis(replicateNumber));
            experiment.addAnalysisSet(sample, analysisSet);

            peptideShaker = new PeptideShaker(experiment, sample, replicateNumber);

            ArrayList<String> tips;
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