Examples of com.compomics.util.db.ObjectsCache

        }
        identificationFeaturesGenerator = new IdentificationFeaturesGenerator(identification, searchParameters, idFilter, metrics, spectrumCountingPreferences, sequenceMatchingPreferences);
        if (experimentSettings.getIdentificationFeaturesCache() != null) {
            identificationFeaturesGenerator.setIdentificationFeaturesCache(experimentSettings.getIdentificationFeaturesCache());
        }
        objectsCache = new ObjectsCache();
        objectsCache.setAutomatedMemoryManagement(true);
        String dbFolder = PeptideShaker.getSerializationDirectory(jarFilePath).getAbsolutePath();
        identification.establishConnection(dbFolder, false, objectsCache);
        loadUserPreferences();
        userPreferences.addRecentProject(cpsFile);

            SequenceMatchingPreferences sequenceMatchingPreferences, boolean backgroundThread) {


        waitingHandler.appendReport("Import process for " + experiment.getReference() + " (Sample: " + sample.getReference() + ", Replicate: " + replicateNumber + ")", true, true);
        waitingHandler.appendReportEndLine();


        objectsCache = new ObjectsCache();
        objectsCache.setAutomatedMemoryManagement(true);


        ProteomicAnalysis analysis = experiment.getAnalysisSet(sample).getProteomicAnalysis(replicateNumber);
        analysis.addIdentificationResults(IdentificationMethod.MS2_IDENTIFICATION, new Ms2Identification(getIdentificationReference()));
        Identification identification = analysis.getIdentification(IdentificationMethod.MS2_IDENTIFICATION);

Related Classes of com.compomics.util.db.ObjectsCache

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