case CLUSTER:
clusterOut = tempOut + Path.SEPARATOR + CLUSTER_SUFFIX;
int runIter = 0;
do {
result = ToolRunner.run(new Configuration(),
new ClusterPresenceVectors(runIter),
new String[]{pvOut, clusterOut, numSeq, numClusters, kmerLen});
runIter++;
} while (result == ClusterPresenceVectors.CODE_LOOP);
if (result == ClusterPresenceVectors.CODE_CONVERGED) {
result = ToolRunner.run(new Configuration(),
new ClusterPresenceVectors(),
new String[]{pvOut, clusterOut, numSeq, numClusters, kmerLen});
}
if (result < 0) {
System.err.println(ClusterPresenceVectors.class.getName() + " failed.");