Package ca.eandb.jmist.framework.function

Examples of ca.eandb.jmist.framework.function.AXpBFunction1


//        1.5608 * scattererFractionInMesophyll,
//        IOR_WATER);

    Function1 iorMesophyll = new ConstantFunction1(1.415);

    Function1 iorAntidermalWall = new AXpBFunction1(
        (1.0 - scattererFractionInAntidermalWall),
        1.535 * scattererFractionInAntidermalWall,
        IOR_WATER);

    double concDryMatter = dryBulkDensity / (1.0 - airVolumeFraction);

    double concProtein = concDryMatter * proteinFraction;
    double concCellulose = concDryMatter * celluloseFraction;
    double concLignin = concDryMatter * ligninFraction;

    double absProtein = concProtein * SAC_PROTEIN;
    double absCellulose = concCellulose * SAC_CELLULOSE_LIGNIN;
    double absLignin = concLignin * SAC_CELLULOSE_LIGNIN;

    Function1 mesophyllAbsorptionCoefficient = new SumFunction1()
      .addChild(new ScaledFunction1(
          concChlorophyllAInMesophyll + concChlorophyllBInMesophyll,
          SAC_CHLOROPHYLL_AB))
      .addChild(new ScaledFunction1(
          concCarotenoidsInMesophyll,
          SAC_CAROTENOIDS))
      .addChild(new ConstantFunction1(absProtein + absCellulose + absLignin))
      .addChild(SAC_WATER);

//    try {
//      OutputStream file = new FileOutputStream("/Users/brad/mesosac.csv");
//      PrintStream out = new PrintStream(new CompositeOutputStream()
//          .addChild(System.out)
//          .addChild(file));
//      for (int i = 400; i <= 700; i += 5) {
//        out.println(mesophyllAbsorptionCoefficient.evaluate(1e-9 * (double) i));
//      }
//      out.flush();
//      file.close();
//    } catch (IOException e) {
//      e.printStackTrace();
//    }

    double mesophyllFraction = bifacial ? 0.5 : 0.8;
    mesophyllThickness = mesophyllFraction * wholeLeafThickness;

    double lambda = 550e-9;
    System.out.printf("mesophyllAbsorptionCoefficient=%f", mesophyllAbsorptionCoefficient.evaluate(lambda));
    System.out.println();
    System.out.printf("mesophyllThickness=%f", mesophyllThickness);
    System.out.println();
    System.out.printf("mesophyllOpticalDepth=%f", mesophyllAbsorptionCoefficient.evaluate(lambda) * mesophyllThickness);
    System.out.println();
    System.out.printf("nCuticle=%f", IOR_CUTICLE.evaluate(lambda));
    System.out.println();
    System.out.printf("nWater=%f", IOR_WATER.evaluate(lambda));
    System.out.println();
    System.out.printf("sacWater=%f", SAC_WATER.evaluate(lambda));
    System.out.println();
    System.out.printf("nWall=%f", iorAntidermalWall.evaluate(lambda));
    System.out.println();
    System.out.printf("nMesophyll=%f", iorMesophyll.evaluate(lambda));
    System.out.println();
    System.out.printf("dryBulkDensity=%f", dryBulkDensity);
    System.out.println();
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