Package bgu.bio.algorithms.graphs.hsa.matchers

Examples of bgu.bio.algorithms.graphs.hsa.matchers.MatcherFactory

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  }

  private static void checkTrees(Tree t, CostFunction w, Tree s) {
    TIntArrayList[] alignment = new TIntArrayList[3];
    MatcherFactory matcherFactory = new UnorderedMatcherFactory();
    HSA hsa = new HSA(w, matcherFactory);

    double cost = hsa.computeHSA(t, s, alignment);
    System.out.println("Cost: " + cost);
    for (int i = 0; i < alignment[0].size(); ++i) {
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    prune.calculateCost(s);
    smooth.calculateCost(s);

    TIntArrayList[] alignment = new TIntArrayList[3];
    MatcherFactory matcherFactory = new UnorderedMatcherFactory();
    // MatcherFactory matcherFactory = new OrderedMatcherFactory();
    HSA hsa = new HSA(cost, matcherFactory);

    System.out.println("Cost: " + hsa.computeHSA(s, t, alignment));
    for (int i = 0; i < alignment[0].size(); ++i) {
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  }

  private static void checkTrees(Tree t, CostFunction w, Tree s) {
    TIntArrayList[] alignment = new TIntArrayList[3];
    MatcherFactory matcherFactory = new UnorderedMatcherFactory();
    HSA hsa = new HSA(w, matcherFactory);

    double cost = hsa.computeHSA(t, s, alignment);
    System.out.println("Cost: " + cost);
    for (int i = 0; i < alignment[0].size(); ++i) {
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    prune.calculateCost(s);
    smooth.calculateCost(s);

    TIntArrayList[] alignment = new TIntArrayList[3];
    MatcherFactory matcherFactory = new UnorderedMatcherFactory();
    // MatcherFactory matcherFactory = new OrderedMatcherFactory();
    HSA hsa = new HSA(cost, matcherFactory);

    System.out.println("Cost: " + hsa.computeHSA(s, t, alignment));
    for (int i = 0; i < alignment[0].size(); ++i) {
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Related Classes of bgu.bio.algorithms.graphs.hsa.matchers.MatcherFactory

  • bgu.bio.algorithms.graphs.Test
  • bgu.bio.algorithms.graphs.TestHSA
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