Package bgu.bio.adt.tuples

Examples of bgu.bio.adt.tuples.IntPairComparator

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  }

  public ArrayList<RNA> splitToStems(int maxGapSize) {
    // get the pairs in the structure
    ArrayList<IntPair> pairs = this.extractPairs();
    Collections.sort(pairs, new IntPairComparator());

    ArrayList<ArrayList<IntPair>> stackings = new ArrayList<ArrayList<IntPair>>();

    for (int p = 0; p < pairs.size(); p++) {
      IntPair current = pairs.get(p);
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    Assert.assertEquals("Cavity matching answer is wrong", 13,
        matcher.minCostCavityMatching(7, 5), 0.001);

    TIntArrayList[] matching = matcher.getCavityMatching(7, 5);
    IntPairComparator comp = new IntPairComparator();

    ArrayList<IntPair> ans = new ArrayList<IntPair>();
    ArrayList<IntPair> exp = new ArrayList<IntPair>();

    ans.add(new IntPair(6, 3));
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Related Classes of bgu.bio.adt.tuples.IntPairComparator

  • bgu.bio.algorithms.graphs.TestHSA
  • bgu.bio.ds.rna.RNA
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