Examples of au.org.intersect.samifier.reporter.ReportLister

        analyser.initMemoryDb();
        analyser.runWithQuery(sqlQuery);
    }


    private static String getQueryFromFile(String repId, String repListFile) {
        ReportLister reportLister = new ReportLister(repListFile);
        return reportLister.getQueryByReportId(repId);
    }

            File resultAnalysisFile = File.createTempFile("out", "txt");
            resultAnalysisFile.deleteOnExit();


            ResultAnalyserRunner analyser = new ResultAnalyserRunner(mascotFile, genomeFile, mapFile, 
                resultAnalysisFile, chromosomeDir);
            ReportLister reportLister = new ReportLister(repList);
            
            analyser.initMemoryDb();
            analyser.runWithQuery(reportLister.getQueryByReportId(repId));


            List<String> expectedLines = FileUtils.readLines(new File("test/resources/expected_results_analysis.txt"));
            List<String> gotLines = FileUtils.readLines(resultAnalysisFile);
            
            assertEquals(expectedLines.size(), gotLines.size());

Related Classes of au.org.intersect.samifier.reporter.ReportLister

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