Package au.org.intersect.samifier.reporter

Examples of au.org.intersect.samifier.reporter.DatabaseHelper

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    }

    private static void mainWithQuery(ResultAnalyserRunner analyser,
            String sqlQuery) throws Exception {
        if (sqlQuery.isEmpty()) {
            DatabaseHelper db = new DatabaseHelper();
            db.printTableDetails(null);
            db.shutdown();
            return;
        }
        analyser.initMemoryDb();
        analyser.runWithQuery(sqlQuery);
    }
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        this.outputFile = outputFile;
        this.chromosomeDir = chromosomeDir;
    }

    public void initMemoryDb() throws Exception {
        hsqldb = new DatabaseHelper();
        hsqldb.connect();
        hsqldb.generateTables();
    }
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    @Test
    public void testDatabaseConnection()
    {
        try
        {
          DatabaseHelper db = new DatabaseHelper();
          db.connect();
        db.generateTables();
       
        Collection<String> result = db.filterResult("SELECT * FROM Result;");
        System.out.println(result.toString());
        db.shutdown();
        }
        catch (Exception e)
        {
          System.out.println("HSQLDB error:" + e);
          fail("Unexpected exception: " + e.getMessage());
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                + "\nqueryid"
                + "\nPEPTIDE_SEQUENCE"
                + "\nFILENAME"
                + "\nCOMMENTS";
      expectedString = expectedString.toUpperCase();
      DatabaseHelper db = new DatabaseHelper();
      db.printTableDetails(ps);
     
      verify(ps).println(expectedString);
     
    }
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Related Classes of au.org.intersect.samifier.reporter.DatabaseHelper

  • au.org.intersect.samifier.reporter.DatabaseHelperTest
  • au.org.intersect.samifier.ResultsAnalyser
  • au.org.intersect.samifier.runner.ResultAnalyserRunner
  • org.hsqldb.server.Server
  • java.sql.ResultSet
  • java.sql.Statement
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