Package au.org.intersect.samifier.filter

Examples of au.org.intersect.samifier.filter.ConfidenceScoreFilter

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                genome, proteinToOLNMap, chromosomeDir);
        Set<String> foundProteins = new HashSet<String>();

        PeptideSearchResultFilter peptideFilter = null;
        if (confidenceScore != null) {
            peptideFilter = new ConfidenceScoreFilter(confidenceScore);
        }

        for (PeptideSearchResult result : peptideSearchResults) {
            if (peptideFilter != null && !peptideFilter.accepts(result)) {
                continue;
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        this.searchResultsPaths = searchResultsPaths;
        this.genomeFile = genomeFile;
        this.chromosomeDir = chromosomeDir;
        this.translationTableFile = translationTableFile;
        if (confidenceScore != null) {
            peptideFilter = new ConfidenceScoreFilter(confidenceScore);
        }
    }
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Related Classes of au.org.intersect.samifier.filter.ConfidenceScoreFilter

  • au.org.intersect.samifier.generator.VirtualProteinMascotLocationGenerator
  • au.org.intersect.samifier.runner.SamifierRunner
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