}
}
for (String chromosome : locationByChromosome.keySet()) {
StringBuilder genomeString = readGenomeFile(chromosome);
List<ProteinLocation> locationForChromosome = locationByChromosome.get(chromosome);
ProteinOutputterGenerator outputterGenerator = new ProteinOutputterGenerator(
databaseName, genomeString, table);
ProteinLocationFileGenerator.generateFile(locationForChromosome, outputWriter,
outputterGenerator);
}
if (outputWriter != null) {