Package au.org.intersect.samifier.domain

Examples of au.org.intersect.samifier.domain.EqualProteinOLNMap


        List<ProteinLocation> proteinLocations = new ArrayList<ProteinLocation>();
        System.out.println("Generating locations");
        GenomeParserImpl genomeParser = new GenomeParserImpl();
        genome = genomeParser.parseGenomeFile(genomeFile);

        proteinToOLNMap = new EqualProteinOLNMap();

        PeptideSearchResultsParser peptideSearchResultsParser = new PeptideSearchResultsParserImpl(
                proteinToOLNMap);
        List<PeptideSearchResult> peptideSearchResults = peptideSearchResultsParser
                .parseResults(searchResultsPaths);
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    EqualProteinOLNMap map = null;

    @Before
    public void oneTimeSetup()
    {
        map = new EqualProteinOLNMap();
    }
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