Package abra.utils.trio.LocusGenotype

Examples of abra.utils.trio.LocusGenotype.Genotype

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//        if (endIdx >= 0) {
//          int endStopIdx = info.indexOf(";");
//          end = Integer.parseInt(info.substring(endIdx+4, endStopIdx));
//        }
       
        Genotype gt = null;
        double altAlleleFreq = 0.0;
       
       
        String gtString = fields[9].split(":")[0];
       
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//        if (endIdx >= 0) {
//          int endStopIdx = info.indexOf(";");
//          end = Integer.parseInt(info.substring(endIdx+4, endStopIdx));
//        }
       
        Genotype gt = null;
        double altAlleleFreq = 0.0;
       
       
        String gtString = fields[9].split(":")[0];
       
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//        if (endIdx >= 0) {
//          int endStopIdx = info.indexOf(";");
//          end = Integer.parseInt(info.substring(endIdx+4, endStopIdx));
//        }
       
        Genotype gt = null;
        double altAlleleFreq = 0.0;
       
        if (line.contains("APRIM")) {
          String gtString = fields[9];
          if (gtString.equals("0|0")) {
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Related Classes of abra.utils.trio.LocusGenotype.Genotype

  • abra.utils.trio.TrioVcfReader
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