Examples of Galaxy.Toolbox.GalaxyToolDatabase

Galaxy.Toolbox.GalaxyToolDatabase
The GalaxyToolDatabase loads the Galaxy Tools given the root directory of a galaxy installation. It supports loading existing tools, adding new tools, and writing the modified tool library to a directory. @author viper

    
    //ConverterConfig.GALAXY_INPUT_DIR =  "/home/grimmjaw/Documents/College/CS130/Pipelines/galaxy-dist/";
    //ConverterConfig.GALAXY_OUTPUT_DIR = "/home/grimmjaw/workspace/pipelineconverter/data/Galaxy/output/db/";
    
    
    GalaxyToolDatabase tooldb;
    tooldb = new GalaxyToolDatabase();
    //testGalaxyJSON("data/Galaxy/input/gal2.ga", "data/Galaxy/output/gal2.ga");
    
    //testLoniXML("data/Loni/input/loni1.pipe", "data/Loni/output/loni1.pipe");
    
    testGalaxyJSON("data/Galaxy/input/capspace1.ga","data/Galaxy/output/capspace1.ga");

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  }
  public static void TestTools(){
    ConverterConfig.GALAXY_INPUT_DIR = TEST_G2L_GAL_TOOL_IN_DIR;
    ConverterConfig.GALAXY_OUTPUT_DIR = TEST_G2L_GAL_TOOL_OUT_DIR;
    TEST_TOOLDB = new GalaxyToolDatabase();
    System.out.println("====================");
    System.out.println("Tool Parsing Tests");
    System.out.println("Number Tools: "+TEST_TOOLDB.getTools().size());
    System.out.println("====================");

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